A hallmark of modern biology is tremendous amounts of complex omics data, which require large-scale data management, comprehensive computational
analyses, and efficient integration, for better understanding of the data and hypothesis generation. For soybean with a newly sequenced genome,
there is an increasing need from the soybean community to have a one-stop interactive, web-based portal to browse, access and share knowledge
about soybean.
Towards this, we developed the Soybean Knowledge Base (SoyKB), a comprehensive all-inclusive web resource for soybean. SoyKB is designed to
handle the storage and integration of the gene, genomics, EST, microarray, transcriptomics, proteomics, metabolomics,
pathway and phenotype data.
SoyKB provides an informatics-based social network system to build connections among soybean researchers, producers and consumers.
Latest Developments
October 2011
- Blast sequence similarity search tool added.
- Motif sampler tool added for motif prediction and allows creating web logo.
- Extract genome sequence using chr# and start and end coordinates.
- miRNA mapped to mirBASE database and miRNA family information available.
September 2011
- Mirror site setup.
- Protein 3D structure PDB files links added for download on 3D structure viewer.
- Download data now allows all 3 domain information option.
July 2011
- Password forgot/reset feature added.
- Microarray data submission for MAS5 format.
- Alternative splice variant information added on Gene card page.
- Overlapping gene information added to the SNP card page.
- Overlapping SNP information added to the gene card page.
- Data sources information page added under Information.